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Perimenopause vs Long Covid Symptoms: Understanding the Overlap

Perimenopause and long covid share brain fog, fatigue, and palpitations. Learn how to distinguish them and work with doctors on both at once.

6 min readFebruary 28, 2026

Two Conditions That Arrived Together for Many Women

The peak years of covid infection and the years when perimenopause typically begins overlap substantially. Many women aged 40 to 55 developed long covid symptoms after infection and found it almost impossible to separate those from the perimenopause symptoms they were already experiencing, or that began around the same time. The clinical challenge is real: both conditions can produce fatigue, brain fog, palpitations, sleep disruption, breathlessness, and mood changes. Doctors themselves have found it difficult to attribute symptoms clearly to one cause or the other, and many women have been caught between specialists who each focus on one condition.

Symptoms That Appear in Both

Brain fog is one of the most commonly reported symptoms of both perimenopause and long covid. In perimenopause, it relates to fluctuating estrogen and its effects on neurotransmitter function, acetylcholine, and cerebral blood flow. In long covid, it is associated with neuroinflammation, microvascular changes, and autonomic nervous system dysregulation. Fatigue in perimenopause is partly driven by disrupted sleep, hormonal shifts, and increased metabolic demand. Long covid fatigue has a different mechanism, often involving post-exertional malaise, mitochondrial dysfunction, and autonomic instability. Heart palpitations, sleep disruption, and anxiety appear in both for overlapping but distinct physiological reasons.

Features That Help Distinguish Them

Timeline and onset are the most useful distinguishing features. Perimenopause symptoms typically develop gradually over months to years and fluctuate with the menstrual cycle or in relation to stress and sleep. Long covid symptoms typically begin within weeks of a documented or suspected covid infection and may have a more constant, less fluctuating quality. Post-exertional malaise, meaning a significant worsening of all symptoms after physical or cognitive effort, is a hallmark feature of long covid that is not typical of perimenopause. If walking to the shops leaves you exhausted for two days, that pattern is more consistent with long covid or ME/CFS than with perimenopause alone.

Post-Viral Mechanisms in Long Covid

Long covid involves several mechanisms that are distinct from hormonal change. These include persistent viral antigen reservoirs, dysregulated immune activation, autoantibody formation, autonomic nervous system dysfunction, and microvascular damage. The autonomic dysfunction component, sometimes called dysautonomia, can cause orthostatic intolerance (dizziness on standing), palpitations, and exercise intolerance that looks different from the hot-flush-related palpitations of perimenopause. Mast cell activation, which appears in some long covid cases, can cause flushing, hives, and gut symptoms that superficially resemble perimenopausal vasomotor symptoms but have a different clinical character.

When Both Are Happening at Once

Having both perimenopause and long covid simultaneously is not unusual, and treating one does not necessarily resolve the other. Some women report that starting HRT improved their cognitive symptoms and energy significantly, suggesting estrogen deficiency was a major contributor to their overall presentation. Others find that HRT provides modest relief but long covid symptoms persist, indicating that both need addressing separately. A small body of research has explored whether estrogen may have some protective or therapeutic role in long covid, but this is not established enough to drive clinical decisions. The practical approach is to advocate for assessment and treatment of both conditions in parallel.

Working With Doctors on Both Conditions

Getting appropriate care for both perimenopause and long covid can require persistence. Long covid clinics exist in many NHS areas and can provide multidisciplinary assessment. Perimenopause care is best sought from a GP with a menopause interest or a registered menopause specialist. Bringing a clear written summary of all symptoms, their timing relative to covid infection, and their relationship to your menstrual cycle can help each clinician understand the full picture. Asking explicitly whether hormonal assessment is relevant is worthwhile even in a long covid clinic setting, as hormonal factors are not always considered in that context.

Logging Symptoms Across Both Conditions

When two overlapping conditions are present, keeping detailed symptom records becomes especially valuable. Being able to show a doctor how symptoms fluctuate day to day, whether they worsen after exertion, and how they have changed since any treatment was started gives clinicians much better information than recall alone. Apps like PeriPlan let you log symptoms and track patterns over time. Even if some symptoms belong to long covid rather than perimenopause, having a consistent log of how you feel, your sleep quality, and your energy levels helps build the picture needed for informed care decisions. Noting whether symptoms are worse after activity is particularly useful for distinguishing post-exertional malaise from general perimenopausal fatigue, and that distinction shapes the management advice you receive significantly.

Related reading

ArticlesPerimenopause vs Chronic Fatigue Syndrome: How to Tell the Difference
GuidesYour First Perimenopause Appointment: What to Say and How to Prepare
Medical disclaimerThis content is for informational purposes only and does not constitute medical advice, diagnosis, or treatment. Always consult a qualified healthcare provider with questions about a medical condition. PeriPlan is not a substitute for professional medical advice. If you are experiencing severe or concerning symptoms, please contact your doctor or emergency services immediately.

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